Selected publications

Publications that are part of the Web of Science database, possibly also other publications chosen by authors.

2021

• Agrawal, R; Fajkus, J; Thakur, JK, 2021: The kinase module of the Mediator complex: an important signalling processor for the development and survival of plants. JOURNAL OF EXPERIMENTAL BOTANY 72(2), p. 224 - 240, doi: 10.1093/jxb/eraa439
• Sorge, E; Demidov, D; Lermontova, I; Houben, A; Conrad, U, 2021: Engineered degradation of EYFP-tagged CENH3 via the 26S proteasome pathway in plants. PLOS ONE 16(2), doi: 10.1371/journal.pone.0247015
• Fajkus, P; Peska, V; Fajkus, J; Sykorova, E, 2021: Origin and Fates of TERT Gene Copies in Polyploid Plants. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 22(4), doi: 10.3390/ijms22041783
• Peska, V; Fajkus, P; Bubenik, M; Brazda, V; Bohalova, N; Dvoracek, V; Fajkus, J; Garcia, S, 2021: Extraordinary diversity of telomeres, telomerase RNAs and their template regions in Saccharomycetaceae. SCIENTIFIC REPORTS 11(1), doi: 10.1038/s41598-021-92126-x
• Jernfors, T; Danforth, J; Kesaniemi, J; Lavrinienko, A; Tukalenko, E; Fajkus, J; Dvorackova, M; Mappes, T; Watts, PC, 2021: Expansion of rDNA and pericentromere satellite repeats in the genomes of bank voles Myodes glareolus exposed to environmental radionuclides. ECOLOGY AND EVOLUTION 11(13), p. 8754 - 8767, doi: 10.1002/ece3.7684
• Lycka, M; Peska, V; Demko, M; Spyroglou, I; Kilar, A; Fajkus, J; Fojtova, M, 2021: WALTER: an easy way to online evaluate telomere lengths from terminal restriction fragment analysis. BMC BIOINFORMATICS 22(1), doi: 10.1186/s12859-021-04064-0
• Kutashev, KO; Franek, M; Diamanti, K; Komorowski, J; Olsinova, M; Dvorackova, M, 2021: Nucleolar rDNA folds into condensed foci with a specific combination of epigenetic marks. PLANT JOURNAL 105(6), p. 1534 - 1548, doi: 10.1111/tpj.15130
• Konecna, K; Sovakova, PP; Antekova, K; Fajkus, J; Fojtova, M, 2021: Distinct Responses of Arabidopsis Telomeres and Transposable Elements to Zebularine Exposure. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 22(1), doi: 10.3390/ijms22010468
• Kolarova, K; Dadejova, MN; Loja, T; Lochmanova, G; Sykorova, E; Dvorackova, M, 2021: Disruption of NAP1 genes in Arabidopsis thaliana suppresses the fas1 mutant phenotype, enhances genome stability and changes chromatin compaction. PLANT JOURNAL 106(1), p. 56 - 73, doi: 10.1111/tpj.15145
• Goffova, I; Fajkus, J, 2021: The rDNA Loci-Intersections of Replication, Transcription, and Repair Pathways. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 22(3), doi: 10.3390/ijms22031302
• Municio, C; Antosz, W; Grasser, KD; Kornobis, E; Van Bel, M; Eguinoa, I; Coppens, F; Brautigam, A; Lermontova, I; Bruckmann, A; Zelkowska, K; Houben, A; Schubert, V, 2021: The Arabidopsis condensin CAP-D subunits arrange interphase chromatin. NEW PHYTOLOGIST , doi: 10.1111/nph.17221

2020

• Picart-Picolo, A; Grob, S; Picault, N; Franek, M; Llauro, C; Halter, T; Maier, TR; Jobet, E; Descombin, J; Zhang, PP; Paramasivan, V; Baum, TJ; Navarro, L; Dvorackova, M; Mirouze, M; Pontvianne, F, 2020: Large tandem duplications affect gene expression, 3D organization, and plant-pathogen response. GENOME RESEARCH 30(11), p. 1583 - 1592, doi: 10.1101/gr.261586.120
• Byska, J; Jurcik, A; Furmanova, K; Kozlikova, B; Palecek, JJ, 2020: Visual Analysis of Protein-Protein Interaction Docking Models Using COZOID Tool. PROTEIN-PROTEIN INTERACTION NETWORKS: METHODS AND PROTOCOLS 2074, p. 81 - 94, doi: 10.1007/978-1-4939-9873-9_7
• Adamusova, K; Khosravi, S; Fujimoto, S; Houben, A; Matsunaga, S; Fajkus, J; Fojtova, M, 2020: Two combinatorial patterns of telomere histone marks in plants with canonical and non-canonical telomere repeats. PLANT JOURNAL 102(4), p. 678 - 687, doi: 10.1111/tpj.14653
• Peska, V; Matl, M; Mandakov, T; Vitales, D; Fajkus, P; Fajkus, J; Garcia, S, 2020: Human-like telomeres in Zostera marina reveal a mode of transition from the plant to the human telomeric sequences. JOURNAL OF EXPERIMENTAL BOTANY 71(19), p. 5786 - 5793, doi: 10.1093/jxb/eraa293
• Skolakova, P; Badri, Z; Foldynova-Trantirkova, S; Rynes, J; Sponer, J; Fojtova, M; Fajkus, J; Marek, R; Vorlickova, M; Mergny, JL; Trantirek, L, 2020: Composite 5-methylations of cytosines modulate i-motif stability in a sequence-specific manner: Implications for DNA nanotechnology and epigenetic regulation of plant telomeric DNA. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS 1864(9), doi: 10.1016/j.bbagen.2020.129651
• Havlová, K; Fajkus, J , 2020: G4 Structures in Control of Replication and Transcription of rRNA Genes. FRONTIERS IN PLANT SCIENCE , doi: 10.3389/fpls.2020.593692
• Schorova, S; Fajkus, J; Prochazkova, P, 2020: Optimized Detection of Protein-Protein and Protein-DNA Interactions, with Particular Application to Plant Telomeres. NUCLEUS, 3 EDITION 2175, p. 139 - 167, doi: 10.1007/978-1-0716-0763-3_11
• Vondrova, L; Kolesar, P; Adamus, M; Nociar, M; Oliver, AW; Palecek, JJ, 2020: A role of the Nse4 kleisin and Nse1/Nse3 KITE subunits in the ATPase cycle of SMC5/6. SCIENTIFIC REPORTS 10(1), doi: 10.1038/s41598-020-66647-w
• Santos, AP; Gaudin, V; Mozgova, I; Pontvianne, F; Schubert, D; Tek, AL; Dvorackova, M; Liu, C; Fransz, P; Rosa, S; Farrona, S, 2020: Tidying-up the plant nuclear space: domains, functions, and dynamics. JOURNAL OF EXPERIMENTAL BOTANY 71(17), p. 5160 - 5178, doi: 10.1093/jxb/eraa282
• Hurny, A; Cuesta, C; Cavallari, N; Otvos, K; Duclercq, J; Dokladal, L; Montesinos, JC; Gallemi, M; Semeradova, H; Rauter, T; Stenzel, I; Persiau, G; Benade, F; Bhalearo, R; Sykorova, E; Gorzsas, A; Sechet, J; Mouille, G; Heilmann, I; De Jaeger, G; Ludwig-Muller, J; Benkova, E, 2020: SYNERGISTIC ON AUXIN AND CYTOKININ 1 positively regulates growth and attenuates soil pathogen resistance. NATURE COMMUNICATIONS 11(1), doi: 10.1038/s41467-020-15895-5
• Schrumpfova, PP; Fajkus, J, 2020: Composition and Function of Telomerase-A Polymerase Associated with the Origin of Eukaryotes. BIOMOLECULES 10(10), doi: 10.3390/biom10101425
• Fojtova, M; Fajkus, J, 2020: Chromatin, Epigenetics and Plant Physiology. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 21(8), doi: 10.3390/ijms21082763
• Cai, N; Fnaskova, M; Konecna, K; Fojtova, M; Fajkus, J; Coomber, E; Watt, S; Soranzo, N; Preiss, M; Rektor, I, 2020: No Evidence of Persistence or Inheritance of Mitochondrial DNA Copy Number in Holocaust Survivors and Their Descendants. FRONTIERS IN GENETICS 11, doi: 10.3389/fgene.2020.00087

2019

• Schorova, S; Fajkus, J; Zaveska Drabkova, L; Honys, D; Schrumpfova, PP, 2019: The plant Pontin and Reptin homologues, RuvBL1 and RuvBL2a, colocalize with TERT and TRB proteins in vivo, and participate in telomerase biogenesis. PLANT JOURNAL 98(2), p. 195 - 212, doi: 10.1111/tpj.14306
• Fajkus, P; Peška, V; Závodník, M; Fojtová, M; Fulnečková, J; Dobias, Š; Kilar, A; Dvořáčková, M; Zachová, D; Nečasová, I; Sims, J; Sýkorová, E; Fajkus, J, 2019: Telomerase RNAs in land plants. NUCLEIC ACIDS RESEARCH , doi: 10.1093/nar/gkz695
• Lochmanova, G; Ihnatova, I; Kucharikova, H; Brabencova, S; Zachova, D; Fajkus, J; Zdrahal, Z; Fojtova, M, 2019: Different Modes of Action of Genetic and Chemical Downregulation of Histone Deacetylases with Respect to Plant Development and Histone Modifications. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 20(20), doi: 10.3390/ijms20205093
• Peska, V; Mandakova, T; Ihradska, V; Fajkus, J, 2019: Comparative Dissection of Three Giant Genomes: Allium cepa, Allium sativum, and Allium ursinum. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 20(3), doi: 10.3390/ijms20030733
• Goffova, I; Vagnerova, R; Peska, V; Franek, M; Havlova, K; Hola, M; Zachova, D; Fojtova, M; Cuming, A; Kamisugi, Y; Angelis, KJ; Fajkus, J, 2019: Roles of RAD51 and RTEL1 in telomere and rDNA stability in Physcomitrella patens. PLANT JOURNAL 98(6), p. 1090 - 1105, doi: 10.1111/tpj.14304

2018

• Dvorackova, M; Fajkus, J, 2018: Visualization of the Nucleolus Using Ethynyl Uridine. FRONTIERS IN PLANT SCIENCE 9, doi: 10.3389/fpls.2018.00177
• Sovakova, PP; Magdolenova, A; Konecna, K; Rajecka, V; Fajkus, J; Fojtova, M, 2018: Telomere elongation upon transfer to callus culture reflects the reprogramming of telomere stability control in Arabidopsis. PLANT MOLECULAR BIOLOGY 98(2018-02-01T00:00:00.000), p. 81 - 99, doi: 10.1007/s11103-018-0765-2
• Pavlasova, G; Borsky, M; Svobodova, V; Oppelt, J; Cerna, K; Novotna, J; Seda, V; Fojtova, M; Fajkus, J; Brychtova, Y; Doubek, M; Pospisilova, S; Mayer, J; Mraz, M, 2018: Rituximab primarily targets an intra-clonal BCR signaling proficient CLL subpopulation characterized by high CD20 levels. LEUKEMIA 32(9), p. 2028 - 2031, doi: 10.1038/s41375-018-0211-0
• Dvorackova, M; Raposo, B; Matula, P; Fuchs, J; Schubert, V; Peska, V; Desvoyes, B; Gutierrez, C; Fajkus, J, 2018: Replication of ribosomal DNA in Arabidopsis occurs both inside and outside the nucleolus during S phase progression. JOURNAL OF CELL SCIENCE 131(2), doi: 10.1242/jcs.202416

2017

• Brabencova, S; Ihnatova, I; Potesil, D; Fojtova, M; Fajkus, J; Zdrahal, Z; Lochmanova, G, 2017: Variations of Histone Modification Patterns: Contributions of Inter-plant Variability and Technical Factors. FRONTIERS IN PLANT SCIENCE 8, doi: 10.3389/fpls.2017.02084
• Jureckova, JF; Sykorova, E; Hafidh, S; Honys, D; Fajkus, J; Fojtova, M, 2017: Tissue-specific expression of telomerase reverse transcriptase gene variants in Nicotiana tabacum. PLANTA 245(3), p. 549 - 561, doi: 10.1007/s00425-016-2624-1
• Vagnerova, R; Lukesova, A; Lukes, M; Roznovska, P; Hola, M; Fulneckova, J; Fajkus, J; Angelis, KJ, 2017: Evolutionarily Distant Streptophyta Respond Differently to Genotoxic Stress. GENES 8(11), doi: 10.3390/genes8110331
• Peska, V; Sitova, Z; Fajkus, P; Fajkus, J, 2017: BAL31-NGS approach for identification of telomeres de novo in large genomes. METHODS 114, p. 16 - 27, doi: 10.1016/j.ymeth.2016.08.017

2016

• Marecek, R; Lamos, M; Mikl, M; Barton, M; Fajkus, J; Rektor, I; Brazdil, M, 2016: What can be found in scalp EEG spectrum beyond common frequency bands. EEG-fMRI study. JOURNAL OF NEURAL ENGINEERING 13(4), doi: 10.1088/1741-2560/13/4/046026
• Schrumpfova, PP; Schorova, S; Fajkus, J, 2016: Telomere- and Telomerase-Associated Proteins and Their Functions in the Plant Cell. FRONTIERS IN PLANT SCIENCE 7, doi: 10.3389/fpls.2016.00851
• Pontvianne, F; Carpentier, MC; Durut, N; Pavlistova, V; Jaske, K; Schorova, S; Parrinello, H; Rohmer, M; Pikaard, CS; Fojtova, M; Fajkus, J; Saez-Vasquez, J, 2016: Identification of Nucleolus-Associated Chromatin Domains Reveals a Role for the Nucleolus in 3D Organization of the A. thaliana Genome. CELL REPORTS 16(6), p. 1574 - 1587, doi: 10.1016/j.celrep.2016.07.016

2015

• Peska, V; Fajkus, P; Fojtova, M; Dvorackova, M; Hapala, J; Dvoracek, V; Polanska, P; Leitch, AR; Sykorova, E; Fajkus, J, 2015: Characterisation of an unusual telomere motif (TTTTTTAGGG)(n) in the plant Cestrum elegans (Solanaceae), a species with a large genome. PLANT JOURNAL 82(4), p. 644 - 654, doi: 10.1111/tpj.12839
• Muchova, V; Amiard, S; Mozgova, I; Dvorackova, M; Gallego, ME; White, C; Fajkus, J, 2015: Homology-dependent repair is involved in 45S rDNA loss in plant CAF-1 mutants. PLANT JOURNAL 81(2), p. 198 - 209, doi: 10.1111/tpj.12718

2014

• Schrumpfova, PP; Vychodilova, I; Dvorackova, M; Majerska, J; Dokladal, L; Schorova, S; Fajkus, J, 2014: Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. PLANT JOURNAL 77(5), p. 770 - 781, doi: 10.1111/tpj.12428
• Ogrocka, A; Polanska, P; Majerova, E; Janeba, Z; Fajkus, J; Fojtova, M, 2014: Compromised telomere maintenance in hypomethylated Arabidopsis thaliana plants. NUCLEIC ACIDS RESEARCH 42(5), p. 2919 - 2931, doi: 10.1093/nar/gkt1285
• Majerova, E; Mandakova, T; Vu, GTH; Fajkus, J; Lysak, MA; Fojtova, M, 2014: Chromatin features of plant telomeric sequences at terminal vs. internal positions. FRONTIERS IN PLANT SCIENCE 5, p. 593 - , doi: 10.3389/fpls.2014.00593

2013

• Kruta, M; Balek, L; Hejnova, R; Dobsakova, Z; Eiselleova, L; Matulka, K; Barta, T; Fojtik, P; Fajkus, J; Hampl, A; Dvorak, P; Rotrekl, V, 2013: Decrease in Abundance of Apurinic/Apyrimidinic Endonuclease Causes Failure of Base Excision Repair in Culture-Adapted Human Embryonic Stem Cells. STEM CELLS 31(4), p. 693 - 702, doi: 10.1002/stem.1312
• Pontvianne, F; Blevins, T; Chandrasekhara, C; Mozgova, I; Hassel, C; Pontes, OMF; Tucker, S; Mokros, P; Muchova, V; Fajkus, J; Pikaard, CS, 2013: Subnuclear partitioning of rRNA genes between the nucleolus and nucleoplasm reflects alternative epiallelic states. GENES & DEVELOPMENT 27(14), p. 1545 - 1550, doi: 10.1101/gad.221648.113
• Cincarova, L; Zdrahal, Z; Fajkus, J, 2013: New perspectives of valproic acid in clinical practice. EXPERT OPINION ON INVESTIGATIONAL DRUGS 22(12), p. 1535 - 1547, doi: 10.1517/13543784.2013.853037
• Fulneckova, J; Sevcikova, T; Fajkus, J; Lukesova, A; Lukes, M; Vlcek, C; Lang, BF; Kim, E; Elias, M; Sykorova, E, 2013: A Broad Phylogenetic Survey Unveils the Diversity and Evolution of Telomeres in Eukaryotes. GENOME BIOLOGY AND EVOLUTION 5(3), p. 468 - 483, doi: 10.1093/gbe/evt019

2012

• Sykorova, E; Fulneckova, J; Mokros, P; Fajkus, J; Fojtova, M; Peska, V, 2012: Three TERT genes in Nicotiana tabacum. CHROMOSOME RESEARCH 20(4), p. 381 - 394, doi: 10.1007/s10577-012-9282-3
• Polanska, E; Dobsakova, Z; Dvorackova, M; Fajkus, J; Stros, M, 2012: HMGB1 gene knockout in mouse embryonic fibroblasts results in reduced telomerase activity and telomere dysfunction. CHROMOSOMA 121(4), p. 419 - 431, doi: 10.1007/s00412-012-0373-x
• Fulneckova, J; Hasikova, T; Fajkus, J; Lukesova, A; Elias, M; Sykorova, E, 2012: Dynamic Evolution of Telomeric Sequences in the Green Algal Order Chlamydomonadales. GENOME BIOLOGY AND EVOLUTION 4(3), p. 248 - 264, doi: 10.1093/gbe/evs007
• Ogrocka, A; Sykorova, E; Fajkus, J; Fojtova, M, 2012: Developmental silencing of the AtTERT gene is associated with increased H3K27me3 loading and maintenance of its euchromatic environment. JOURNAL OF EXPERIMENTAL BOTANY 63(11), p. 4233 - 4241, doi: 10.1093/jxb/ers107
• Cincarova, L; Lochmanova, G; Novakova, K; Sultesova, P; Konecna, H; Fajkusova, L; Fajkus, J; Zdrahal, Z, 2012: A combined approach for the study of histone deacetylase inhibitors. MOLECULAR BIOSYSTEMS 8(11), p. 2937 - 2945, doi: 10.1039/c2mb25136a

2011

• Peska, V; Schrumpfova, PP; Fajkus, J, 2011: Using the Telobox to Search for Plant Telomere Binding Proteins. CURRENT PROTEIN & PEPTIDE SCIENCE 12(2), p. 75 - 83
• Majerova, E; Fojtova, M; Mozgova, I; Bittova, M; Fajkus, J, 2011: Hypomethylating drugs efficiently decrease cytosine methylation in telomeric DNA and activate telomerase without affecting telomere lengths in tobacco cells. PLANT MOLECULAR BIOLOGY 77(42128), p. 371 - 380, doi: 10.1007/s11103-011-9816-7
• Schrumpfova, PP; Fojtova, M; Mokros, P; Grasser, KD; Fajkus, J, 2011: Role of HMGB Proteins in Chromatin Dynamics and Telomere Maintenance in Arabidopsis thaliana. CURRENT PROTEIN & PEPTIDE SCIENCE 12(2), p. 105 - 111
• Fajkus, J, 2011: Proteins in Signalling Pathways and Chromosome Stability in Plants. CURRENT PROTEIN & PEPTIDE SCIENCE 12(2), p. 74 - 74
• Majerska, J; Sykorova, E; Fajkus, J, 2011: Non-telomeric activities of telomerase. MOLECULAR BIOSYSTEMS 7(4), p. 1013 - 1023, doi: 10.1039/c0mb00268b
• Fojtova, M; Peska, V; Dobsakova, Z; Mozgova, I; Fajkus, J; Sykorova, E, 2011: Molecular analysis of T-DNA insertion mutants identified putative regulatory elements in the AtTERT gene. JOURNAL OF EXPERIMENTAL BOTANY 62(15), p. 5531 - 5545, doi: 10.1093/jxb/err235
• Majerova, E; Fojtova, M; Mandakova, T; Fajkus, J, 2011: Methylation of plant telomeric DNA: what do the results say?. PLANT MOLECULAR BIOLOGY 77(6), p. 533 - 536, doi: 10.1007/s11103-011-9834-5