Lukáš Trantírek, Ph.D.

Publications that are part of the Web of Science database, possibly also other publications chosen by authors.

2021

• Krafcik, D; Istvankova, E; Dzatko, S; Viskova, P; Foldynova-Trantirkova, S; Trantirek, L, 2021: Towards Profiling of the G-Quadruplex Targeting Drugs in the Living Human Cells Using NMR Spectroscopy. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 22(11), doi: 10.3390/ijms22116042
• Cheng, MP; Qiu, DH; Tamon, L; Istvankova, E; Viskova, P; Amrane, S; Guedin, A; Chen, JL; Lacroix, L; Ju, HX; Trantirek, L; Sahakyan, AB; Zhou, J; Mergny, JL, 2021: Thermal and pH Stabilities of i-DNA: Confronting in vitro Experiments with Models and In-Cell NMR Data. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 60(18), p. 10286 - 10294, doi: 10.1002/anie.202016801
• Živković, ML; Gajarský, M; Beková, K; Stadlbauer, P; Vicherek, L; Petrová, M; Fiala, R; Rosenberg, I; Šponer, J; Plavec, J; Trantírek, L, 2021: Insight into formation propensity of pseudocircular DNA G-hairpins. NUCLEIC ACIDS RESEARCH 49(4), p. 2317 - 2332, doi: 10.1093/nar/gkab029
• Broft, P; Dzatko, S; Krafcikova, M; Hansel-Hertsch, R; Wacker, A; Doetsch, V; Trantirek, L; Schwalbe, H , 2021: In-Cell NMR Spectroscopy of Functional Riboswitch Aptamers in Eukaryotic Cells. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 60(2), p. 865 - 872, doi: 10.1002/anie.202007184

2020

• Jurikova, K; Gajarsky, M; Hajikazemi, M; Nosek, J; Prochazkova, K; Paeschke, K; Trantirek, L; Tomaska, L, 2020: Role of folding kinetics of secondary structures in telomeric G-overhangs in the regulation of telomere maintenance inSaccharomyces cerevisiae. JOURNAL OF BIOLOGICAL CHEMISTRY 295(27), p. 8958 - 8971, doi: 10.1074/jbc.RA120.012914
• Dzatko, S; Fiala, R; Hansel-Hertsch, R; Foldynova-Trantirkova, S; Trantirek, L, 2020: In-cell NMR Spectroscopy of Nucleic Acids. IN-CELL NMR SPECTROSCOPY: FROM MOLECULAR SCIENCES TO CELL BIOLOGY 21, p. 272 - 297
• Giassa, IC; Vavrinska, A; Zelinka, J; Sebera, J; Sychrovsky, V; Boelens, R; Fiala, R; Trantirek, L, 2020: HERMES - A Software Tool for the Prediction and Analysis of Magnetic-Field-Induced Residual Dipolar Couplings in Nucleic Acids. CHEMPLUSCHEM 85(9), p. 2177 - 2185, doi: 10.1002/cplu.202000505
• PALUŠOVÁ, V.; RENZOVÁ, T.; VERLANDE, A.; VACLOVÁ, T.; MEDKOVÁ, M.; CETLOVÁ, L.; SEDLÁČKOVÁ, M.; HŘÍBKOVÁ, H.; SLANINOVÁ, I.; KRUTÁ, M.; ROTREKL, V.; UHLÍŘOVÁ, H.; KŘÍŽOVÁ, A.; CHMELÍK, R.; VESELÝ, P.; KRAFČÍKOVÁ, M.; TRANTÍREK, L.; SCHINK, K.; ULDRIJAN, S., 2020: Dual Targeting of BRAF and mTOR Signaling in Melanoma Cells with Pyridinyl Imidazole Compounds. CANCERS 12(6), p. 1 - 24, doi: 10.3390/cancers12061516; FULL TEXT
• Skolakova, P; Badri, Z; Foldynova-Trantirkova, S; Rynes, J; Sponer, J; Fojtova, M; Fajkus, J; Marek, R; Vorlickova, M; Mergny, JL; Trantirek, L, 2020: Composite 5-methylations of cytosines modulate i-motif stability in a sequence-specific manner: Implications for DNA nanotechnology and epigenetic regulation of plant telomeric DNA. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS 1864(9), doi: 10.1016/j.bbagen.2020.129651

2019

• Stadlbauer, P; Kuhrova, P; Vicherek, L; Banas, P; Otyepka, M; Trantirek, L; Sponer, J, 2019: Parallel G-triplexes and G-hairpins as potential transitory ensembles in the folding of parallel-stranded DNA G-Quadruplexes. NUCLEIC ACIDS RESEARCH 47(14), p. 7276 - 7293, doi: 10.1093/nar/gkz610
• Krafcikova, M; Dzatko, S; Caron, C; Granzhan, A; Fiala, R; Loja, T; Teulade-Fichou, MP; Fessl, T; Hansel-Hertsch, R; Mergny, JL; Foldynova-Trantirkova, S; Trantirek, L, 2019: Monitoring DNA-Ligand Interactions in Living Human Cells Using NMR Spectroscopy. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 141(34), p. 13281 - 13285, doi: 10.1021/jacs.9b03031
• Harnos, J; Canizal, MCA; Jurasek, M; Kumar, J; Holler, C; Schambony, A; Hanakova, K; Bernatik, O; Zdrahal, Z; Gomoryova, K; Gybel, T; Radaszkiewicz, TW; Kravec, M; Trantirek, L; Rynes, J; Dave, Z; Fernandez-Llamazares, AI; Vacha, R; Tripsianes, K; Hoffmann, C; Bryja, V, 2019: Dishevelled-3 conformation dynamics analyzed by FRET-based biosensors reveals a key role of casein kinase 1. NATURE COMMUNICATIONS 10, doi: 10.1038/s41467-019-09651-7
• Bosakova, MK; Nita, A; Gregor, T; Varecha, M; Gudernova, I; Fafilek, B; Barta, T; Basheer, N; Abraham, SP; Balek, L; Tomanova, M; Kucerova, JF; Bosak, J; Potesil, D; Zieba, J; Song, J; Konik, P; Park, S; Duran, I; Zdrahal, Z; Smajs, D; Jansen, G; Fu, Z; Ko, HW; Hampl, A; Trantirek, L; Krakow, D; Krejci, P, 2019: Fibroblast growth factor receptor influences primary cilium length through an interaction with intestinal cell kinase. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 116(10), p. 4316 - 4325, doi: 10.1073/pnas.1800338116

2018

• Dzatko, S; Krafcikova, M; Hansel-Hertsch, R; Fessl, T; Fiala, R; Loja, T; Krafcik, D; Mergny, JL; Foldynova-Trantirkova, S; Trantirek, L, 2018: Evaluation of the Stability of DNA i-Motifs in the Nuclei of Living Mammalian Cells. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 57(8), p. 2165 - 2169, doi: 10.1002/anie.201712284
• Verlande, A; Krafcikova, M; Potesil, D; Trantirek, L; Zdrahal, Z; Elkalaf, M; Trnka, J; Soucek, K; Rauch, N; Rauch, J; Kolch, W; Uldrijan, S, 2018: Metabolic stress regulates ERK activity by controlling KSR-RAF heterodimerization. EMBO REPORTS 19(2), p. 320 - 336, doi: 10.15252/embr.201744524
• Harnos, J; Rynes, J; Viskova, P; Foldynova-Trantirkova, S; Bajard-Esner, L; Trantirek, L; Bryja, V, 2018: Analysis of binding interfaces of the human scaffold protein AXIN1 by peptide microarrays. JOURNAL OF BIOLOGICAL CHEMISTRY 293(42), p. 16337 - 16347, doi: 10.1074/jbc.RA118.005127
• Csukasi, F; Duran, I; Barad, M; Barta, T; Gudernova, I; Trantirek, L; Martin, JH; Kuo, CY; Woods, J; Lee, H; Cohn, DH; Krejci, P; Krakow, D, 2018: The PTH/PTHrP-SIK3 pathway affects skeletogenesis through altered mTOR signaling. SCIENCE TRANSLATIONAL MEDICINE 10(459), doi: 10.1126/scitranslmed.aat9356
• Fafilek, B; Balek, L; Bosakova, MK; Varecha, M; Nita, A; Gregor, T; Gudernova, I; Krenova, J; Ghosh, S; Piskacek, M; Jonatova, L; Cernohorsky, NH; Zieba, JT; Kostas, M; Haugsten, EM; Wesche, J; Erneux, C; Trantirek, L; Krakow, D; Krejci, P, 2018: The inositol phosphatase SHIP2 enables sustained ERK activation downstream of FGF receptors by recruiting Src kinases. SCIENCE SIGNALING 11(548), doi: 10.1126/scisignal.aap8608
• Trantirek, L, 2018: NMR spectroscopy of nucleic acids in human cells. FEBS OPEN BIO 8, p. 56 - 56
• Balek, L; Buchtova, M; Bosakova, MK; Varecha, M; Foldynova-Trantirkova, S; Gudernova, I; Vesela, I; Havlik, J; Neburkova, J; Turner, S; Krzyscik, MA; Zakrzewska, M; Klimaschewski, L; Claus, P; Trantirek, L; Cigler, P; Krejci, P, 2018: Nanodiamonds as ´artificial proteins´: Regulation of a cell signalling system using low nanomolar solutions of inorganic nanocrystals. BIOMATERIALS 176, p. 106 - 121, doi: 10.1016/j.biomaterials.2018.05.030
• Giassa, IC; Rynes, J; Fessl, T; Foldynova-Trantirkova, S; Trantirek, L, 2018: Advances in the cellular structural biology of nucleic acids. FEBS LETTERS 592(12), p. 1997 - 2011, doi: 10.1002/1873-3468.13054

2017

• Gajarsky, M; Zivkovic, ML; Stadlbauer, P; Pagano, B; Fiala, R; Amato, J; Tomaska, L; Sponer, J; Plavec, J; Trantirek, L, 2017: Structure of a Stable G-Hairpin. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 139(10), p. 3591 - 3594, doi: 10.1021/jacs.6b10786
• Niklasson, M; Maddalo, G; Sramkova, Z; Mutlu, E; Wee, S; Sekyrova, P; Schmidt, L; Fritz, N; Dehnisch, I; Kyriatzis, G; Krafcikova, M; Carson, BB; Feenstra, JM; Marinescu, VD; Segerman, A; Haraldsson, M; Gustavsson, AL; Hammarstrom, LGJ; Jensen, AJ; Uhrbom, L; Altelaar, AFM; Linnarsson, S; Uhlen, P; Trantirek, L; Vincent, CT; Nelander, S; Enger, PO; Andang, M, 2017: Membrane-Depolarizing Channel Blockers Induce Selective Glioma Cell Death by Impairing Nutrient Transport and Unfolded Protein/Amino Acid Responses. CANCER RESEARCH 77(7), p. 1741 - 1752, doi: 10.1158/0008-5472.CAN-16-2274
• Kejnovska, I; Bednarova, K; Renciuk, D; Dvorakova, Z; Skolakova, P; Trantirek, L; Fiala, R; Vorlickova, M; Sagi, J, 2017: Clustered abasic lesions profoundly change the structure and stability of human telomeric G-quadruplexes. NUCLEIC ACIDS RESEARCH 45(8), p. 4294 - 4305, doi: 10.1093/nar/gkx191
• Dzatko, S; Krafcikova, M; Fiala, R; Fessl, T; Loja, T; Caron, C; Granzhan, A; Fichou, MPT; Mergny, JL; Trantirkova, SF; Trantirek, L, 2017: Cellular structural biology of nucleic acids. FEBS JOURNAL 284, p. 386 - 387
• Gudernova, I; Balek, L; Varecha, M; Kucerova, JF; Bosakova, MK; Fafilek, B; Palusova, V; Uldrijan, S; Trantirek, L; Krejci, P, 2017: Inhibitor repurposing reveals ALK, LTK, FGFR, RET and TRK kinases as the targets of AZD1480. ONCOTARGET 8(65), p. 109319 - 109331, doi: 10.18632/oncotarget.22674
• Renciuk, D; Rynes, J; Kejnovska, I; Foldynova-Trantirkova, S; Andang, M; Trantirek, L; Vorlickova, M, 2017: G-quadruplex formation in the Oct4 promoter positively regulates Oct4 expression. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2(1860), p. 175 - 183, doi: 10.1016/j.bbagrm.2016.11.002
• Linke, F; Harenberg, M; Nietert, M M; Zaunig, S; von Bonin, F; Arlt, A; Szczepanowski, M; Weich, H A; Lutz S; Dullin, C; Janovská, P; Krafčíková, M; Trantírek, L; Ovesná, P; Klapper, W; Beissbarth, T; Alves, F; Bryja, V; Trümper, L; Wilting, J, Kube, D, 2017: Microenvironmental interactions between endothelial and lymphoma cells: a role for the canonical WNT pathway in Hodgkin lymphoma. LEUKEMIA 31(2), p. 361 - 372, doi: 10.1038/leu.2016.232
• Rynes, J; Fessl, T; Krafcikova, M; Trantirek, L; Foldynova-Trantirkova, S, 2017: Structure-activity relationships in polymorphic G-quadruplex forming segment of c-MYC promoter. FEBS JOURNAL 284, p. 274 - 275
• Gregor, T; Rynes, J; Foldynova-Trantirkova, S; Mayer, J; Krejci, P; Trantirek, L, 2017: Systematic analysis of BCR-ABL interactome in chronic myeloid leukemia. FEBS JOURNAL 284, p. 286 - 286
• Gudernova, I; Foldynova-Trantirkova, S; El Ghannamova, B; Fafilek, B; Varecha, M; Balek, L; Hruba, E; Jonatova, L; Jelinkova, I; Kunova Bosakova, M; Trantirek, L; Mayer; J; Krejci, P, 2017: One reporter for in-cell activity profiling of majority of protein kinase oncogenes. ELIFE 6(14), doi: 10.7554/eLife.21536

2016

• Rynes, J; Harnos, J; Bryja, V; Krejci, P; Trantirkova, S; Trantirek, L, 2016: Modulation of cell signaling via interfering specific protein-protein interactions of a hub scaffold protein. FEBS JOURNAL 283, p. 229 - 229
• Vavrinska, A; Zelinka, J; Sebera, J; Sychrovsky, V; Fiala, R; Boelens, R; Sklenar, V; Trantirek, L, 2016: Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions (vol 64, pg 53, 2016). JOURNAL OF BIOMOLECULAR NMR 65(1), p. 49 - 49, doi: 10.1007/s10858-016-0034-0
• Slaninova, V; Krafcikova, M; Perez-Gomez, R; Steffal, P; Trantirek, L; Bray, SJ; Krejci, A, 2016: Notch stimulates growth by direct regulation of genes involved in the control of glycolysis and the tricarboxylic acid cycle. OPEN BIOLOGY 6(2), doi: 10.1098/rsob.150155
• Taylor, SP; Bosakova, MK; Varecha, M; Balek, L; Barta, T; Trantirek, L; Jelinkova, I; Duran, I; Vesela, I; Forlenza, KN; Martin, JH; Hampl, A; Bamshad, M; Nickerson, D; Jaworski, ML; Song, J; Ko, HW; Cohn, DH; Krakow, D; Krejci, P, 2016: An inactivating mutation in intestinal cell kinase, ICK, impairs hedgehog signalling and causes short rib-polydactyly syndrome. HUMAN MOLECULAR GENETICS 25(18), p. 3998 - 4011, doi: 10.1093/hmg/ddw240
• Vavrinska, A; Zelinka, J; Sebera, J; Sychrovsky, V; Fiala, R; Boelens, R; Sklenar, V; Trantirek, L, 2016: Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions. JOURNAL OF BIOMOLECULAR NMR 64(1), p. 53 - 62, doi: 10.1007/s10858-015-0005-x

2015

• Skolakova, P; Foldynova-Trantirkova, S; Bednarova, K; Fiala, R; Vorlickova, M; Trantirek, L, 2015: Unique C. elegans telomeric overhang structures reveal the evolutionarily conserved properties of telomeric DNA. NUCLEIC ACIDS RESEARCH 43(9), p. 4733 - 4745, doi: 10.1093/nar/gkv296
• Kant, SG; Cervenkova, I; Balek, L; Trantirek, L; Santen, GWE; de Vries, MC; van Duyvenvoorde, HA; van der Wielen, MJR; Verkerk, AJMH; Uitterlinden, AG; Hannema, SE; Wit, JM; Oostdijk, W; Krejci, P; Losekoot, M, 2015: A novel variant of FGFR3 causes proportionate short stature. EUROPEAN JOURNAL OF ENDOCRINOLOGY 172(6), p. 763 - 770, doi: 10.1530/EJE-14-0945
• Buchtova, M; Chaloupkova, R; Zakrzewska, M; Vesela, I; Cela, P; Barathova, J; Gudernova, I; Zajickova, R; Trantirek, L; Martin, J; Kostas, M; Otlewski, J; Damborsky, J; Kozubik, A; Wiedlocha, A; Krejci, P, 2015: Instability restricts signaling of multiple fibroblast growth factors. CELLULAR AND MOLECULAR LIFE SCIENCES 72(12), p. 2445 - 2459, doi: 10.1007/s00018-015-1856-8
• Stadlbauer, P; Kuhrova, P; Banas, P; Koca, J; Bussi, G; Trantirek, L; Otyepka, M; Sponer, J, 2015: Hairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations. NUCLEIC ACIDS RESEARCH 43(20), p. 9626 - 9644, doi: 10.1093/nar/gkv994
• Konvalinova, H; Dvorakova, Z; Renciuk, D; Bednarova, K; Kejnovska, I; Trantirek, L; Vorlickova, M; Sagi, J, 2015: Diverse effects of naturally occurring base lesions on the structure and stability of the human telomere DNA quadruplex. BIOCHIMIE 118, p. 15 - 25, doi: 10.1016/j.biochi.2015.07.013

2014

• Hansel, R; Luh, LM; Corbeski, I; Trantirek, L; Dotsch, V, 2014: In-Cell NMR and EPR Spectroscopy of Biomacromolecules. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 53(39), p. 10300 - 10314, doi: 10.1002/anie.201311320
• Bernatik, O; Sedova, K; Schille, C; Ganji, RS; Cervenka, I; Trantirek, L; Schambony, A; Zdrahal, Z; Bryja, V, 2014: Functional Analysis of Dishevelled-3 Phosphorylation Identifies Distinct Mechanisms Driven by Casein Kinase 1 epsilon and Frizzled5. JOURNAL OF BIOLOGICAL CHEMISTRY 289(34), p. 23520 - 23533, doi: 10.1074/jbc.M114.590638
• Sebera, J; Trantirek, L; Tanaka, Y; Nencka, R; Fukal, J; Sychrovsky, V, 2014: The activation of N-glycosidic bond cleavage performed by base-excision repair enzyme hOGG1; theoretical study of the role of Lys 249 residue in activation of G, OxoG and FapyG. RSC ADVANCES 4(83), p. 44043 - 44051, doi: 10.1039/c4ra08278h
• Stadlbauer, P; Trantirek, L; Cheatham, TE; Koca, J; Sponer, J, 2014: Triplex intermediates in folding of human telomeric quadruplexes probed by microsecond-scale molecular dynamics simulations. BIOCHIMIE 105, p. 22 - 35, doi: 10.1016/j.biochi.2014.07.009
• Sebera, J; Trantirek, L; Fukal, J; Tanaka, Y; Sychrovsky, V, 2014: MECHANISM OF BASE EXCISION WITH THE hOGG1 DNA REPAIR ENZYME. CHEMICKE LISTY 108(4), p. 364 - 367

2013

• Emmer, J; Vavrinska, A; Sychrovsky, V; Benda, L; Kriz, Z; Koca, J; Boelens, R; Sklenar, V; Trantirek, L, 2013: Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic N-15 chemical shielding anisotropy tensors. JOURNAL OF BIOMOLECULAR NMR 55(1), p. 59 - 70, doi: 10.1007/s10858-012-9686-6
• Krejci, P; Kunova, M; Kubikova, I; Trantirek, L; Kozubik, A; Dvorak, P, 2013: Expression of FGF19 in Human Embryonic Stem Cells. STEM CELLS 31(11), p. 2582 - 2584, doi: 10.1002/stem.1493
• Hansel, R; Foldynova-Trantirkova, S; Dotsch, V; Trantirek, L, 2013: Investigation of Quadruplex Structure Under Physiological Conditions Using In-Cell NMR. QUADRUPLEX NUCLEIC ACIDS 330, p. 47 - 65, doi: 10.1007/128_2012_332
• Hansel, R; Lohr, F; Trantirek, L; Dotsch, V, 2013: High-Resolution Insight into G-Overhang Architecture. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 135(7), p. 2816 - 2824, doi: 10.1021/ja312403b
• Krejci, P; Kunova, M; Kubikova, I; Trantirek, L; Kozubik, A; Dvorak, P, 2013: Expression of FGF19 in Human Embryonic Stem Cells. STEM CELLS 31(11), p. 2582 - 2584, doi: 10.1002/stem.1493

2012

• Fessl, T; Adamec, F; Polivka, T; Foldynova-Trantirkova, S; Vacha, F; Trantirek, L, 2012: Towards characterization of DNA structure under physiological conditions in vivo at the single-molecule level using single-pair FRET. NUCLEIC ACIDS RESEARCH 40(16), doi: 10.1093/nar/gks333
• Sebera, J; Trantirek, L; Tanaka, Y; Sychrovsky, V, 2012: Pyramidalization of the Glycosidic Nitrogen Provides the Way for Efficient Cleavage of the N-Glycosidic Bond of 8-OxoG with the hOGG1 DNA Repair Protein. JOURNAL OF PHYSICAL CHEMISTRY B 116(41), p. 12535 - 12544, doi: 10.1021/jp309098d
• Sychrovsky, V; Vokacova, ZS; Trantirek, L, 2012: Guanine Bases in DNA G-Quadruplex Adopt Nonplanar Geometries Owing to Solvation and Base Pairing. JOURNAL OF PHYSICAL CHEMISTRY A 116(16), p. 4144 - 4151, doi: 10.1021/jp2110049

2011

• Fiala, R; Spackova, N; Foldynova-Trantirkova, S; Sponer, J; Sklenar, V; Trantirek, L, 2011: NMR Cross-Correlated Relaxation Rates Reveal Ion Coordination Sites in DNA. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 133(35), p. 13790 - 13793, doi: 10.1021/ja202397p
• Hansel, R; Lohr, F; Foldynova-Trantirkova, S; Bamberg, E; Trantirek, L; Dotsch, V, 2011: The parallel G-quadruplex structure of vertebrate telomeric repeat sequences is not the preferred folding topology under physiological conditions. NUCLEIC ACIDS RESEARCH 39(13), p. 5768 - 5775, doi: 10.1093/nar/gkr174
• Dotsch, V; Trantirek, L, 2011: DNA FOLDING IN ´CROWDED´ CONDITIONS. CHEMICAL & ENGINEERING NEWS 89(32), p. 6 - 6

2010

• Kubicek, K; Monnet, J; Scintilla, S; Kopecna, J; Arnesano, F; Trantirek, L; Chopard, C; Natile, G; Kozelka, J, 2010: Unusual Interstrand Pt(S,S-diaminocyclohexane)-GG Crosslink Formed by Rearrangement of a Classical Intrastrand Crosslink Within a DNA Duplex. CHEMISTRY-AN ASIAN JOURNAL 5(2), p. 244 - 247, doi: 10.1002/asia.200900655
• Foldynova-Trantirkova, Silvie; Sekyrova, Petra; Tmejova, Katerina; Brumovska, Eva; Bernatik, Ondrej; Blankenfeldt, Wulf; Krejci, Pavel; Kozubik, Alois; Dolezal, Tomas; Trantirek, Lukas; Bryja, Vitezslav, 2010: Breast cancer-specific mutations in CK1 epsilon inhibit Wnt/beta-catenin and activate the Wnt/Rac1/JNK and NFAT pathways to decrease cell adhesion and promote cell migration. BREAST CANCER RESEARCH 12(3)
• Krejci, P; Murakami, S; Prochazkova, J; Trantirek, L; Chlebova, K; Ouyang, ZF; Aklian, A; Smutny, J; Bryja, V; Kozubik, A; Wilcox, WR, 2010: NF449 Is a Novel Inhibitor of Fibroblast Growth Factor Receptor 3 (FGFR3) Signaling Active in Chondrocytes and Multiple Myeloma Cells. JOURNAL OF BIOLOGICAL CHEMISTRY 285(27), p. 20644 - 20653, doi: 10.1074/jbc.M109.083626
• Vokacova, Z; Trantirek, L; Sychrovsky, V, 2010: Evaluating the Effects of the Nonplanarity of Nucleic Acid Bases on NMR, IR, and Vibrational Circular Dichroism Spectra: A Density Functional Theory Computational Study. JOURNAL OF PHYSICAL CHEMISTRY A 114(37), p. 10202 - 10208, doi: 10.1021/jp102329t

2009

• Sychrovsky, V; Foldynova-Trantirkova, S; Spackova, N; Robeyns, K; Van Meervelt, L; Blankenfeldt, W; Vokacova, Z; Sponer, J; Trantirek, L, 2009: Revisiting the planarity of nucleic acid bases: Pyramidilization at glycosidic nitrogen in purine bases is modulated by orientation of glycosidic torsion. NUCLEIC ACIDS RESEARCH 37(21), p. 7321 - 7331
• Foldynova-Trantirkova, Silvie; Matulova, Jana; Doetsch, Volker; Loehr, Frank; Cirstea, Ion; Alexandov, Kirill; Breitling, Reinhard; Lukes, Julius; Trantirek, Lukas, 2009: A Cost-effective Amino-acid-type Selective Isotope Labeling of Proteins Expressed in Leishmania tarentolae. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 26(6), p. 755 - 761
• Haensel, Robert; Foldynova-Trantirkova, Silvie; Loehr, Frank; Buck, Janina; Bongartz, Eva; Bamberg, Ernst; Schwalbe, Harald; Doetsch, Volker; Trantirek, Lukas, 2009: Evaluation of Parameters Critical for Observing Nucleic Acids Inside Living Xenopus laevis Oocytes by In-Cell NMR Spectroscopy. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 131(43), p. 15761 - 15768

• iNEXT-Discovery: Infrastructure for transnational access and discovery in integrated structural biology (871037), , 2020 - 2024
• STRUCTURAL BIOLOGY – NEXT GENERATION: from isolated molecules to cells, from cells to tissues., Grantová agentura ČR, 2019 - 2023
• STRUCTURAL BIOLOGY – NEXT GENERATION: from isolated molecules to cells, from cells to tissues., Grantová agentura ČR, 2019 - 2023
• Atomically resolved in vivo NMR spectroscopy as a novel tool for biological testing of therapeutically important genomic non-canonical DNA targets and their interactions with drugs in phenotypically diversified cancer cells., Ministry of Health of the CR, 2019 - 2022
• Enabling user access to bioreactors for real-time in-cell NMR, Instruct Academic Service Limited, 2019 - 2021
• Studium interakcí DNA-ligand pomocí in-cell NMR spektroskopie, Ministerstvo školství, mládeže a tělovýchovy ČR, 2018 - 2019
• Studium interakcí DNA-ligand pomocí in-cell NMR spektroskopie, Ministerstvo školství, mládeže a tělovýchovy ČR, 2018 - 2019
• Polymorfní G-quadruplexy v promotorových oblastech genů (GA17-12075S), Grantová agentura ČR, 2017 - 2019
• Profiling DNA structure and DNA ligand interactions inside nuclei of live mammalian cells by in-cell NMR spectroscopy., Masarykova univerzita, 2018 - 2019
• Genomické a proteomické přístupy k objasnění biologických procesů (MUNI/A/0829/2017) (MUNI/A/0829/2017), Grant Agency of Masaryk University, 2018 - 2018
• Charakterizace struktury nukleových kyselin v komplexním prostředí živých buněk pomocí vysoce rozlišené NMR spektroskopie (GA16-10504S), Grantová agentura ČR, 2016 - 2018
• Identifikace nových možností léčby achondroplásie prostřednictvím analýzy interakce FGFR3 a adaptérového proteinu Frs2 (15-33232A), Ministry of Health of the CR, 2015 - 2018
• Identifikace nových možností léčby chronické myeloidní leukémie pomocí systematické analýzy interaktomu proteinu BCR-ABL (15-34405A), Ministry of Health of the CR, 2015 - 2018
• Cellular Structural Biology of non-B DNA Motifs in Human Genome (2535), EMBO (European Molecular Biology Organization), 2013 - 2017
• Cílená terapie proti rezistentím kmenovým buňkám gliomového nádoru - kontrola přísunu živin pomocí iontových kanálů (GA15-20818S), Grantová agentura ČR, 2015 - 2017
• Objasnění biologických procesů genomickými a proteomickými přístupy (BioGenPro) (MUNI/A/1376/2016), Grant Agency of Masaryk University, 2017 - 2017
• Towards selective targeting of DNA G-quadruplexes by small molecular weight ligands within the human genome (4SGA8580), Jihomoravský kraj, 2014 - 2017
• Evolucne konzervované strukturní vlastnosti centromerické a telomerické DNA (GA13-28310S), Grantová agentura ČR, 2013 - 2016
• Environmentally COntrolled POlymorphism of non-B DNA structures (322104), Evropská unie, 2012 - 2016
• Zaměstnáním nejlepších mladých vědců k rozvoji mezinárodní spolupráce (CZ.1.07/2.3.00/30.0037), Ministerstvo školství, mládeže a tělovýchovy ČR, 2013 - 2015
• Development of novel in-cell NMR experiments and data interpretation schemes for ab initio determination of nucleic acid structure (20121005), Instruct Academic Service Limited, 2012 - 2013