Terezie Mandáková, Ph.D.

Publications that are part of the Web of Science database, possibly also other publications chosen by authors.

2021

• Hendriks, KP; Mandakova, T; Hay, NM; Ly, E; van Huysduynen, AH; Tamrakar, R; Thomas, SK; Toro-Nunez, O; Pires, JC; Nikolov, LA; Koch, MA; Windham, MD; Lysak, MA; Forest, F; Mummenhoff, K; Baker, WJ; Lens, F; Bailey, CD, 2021: The best of both worlds: Combining lineage-specific and universal bait sets in target-enrichment hybridization reactions. APPLICATIONS IN PLANT SCIENCES 9(7), doi: 10.1002/aps3.11438
• Chumova, Z; Mandakova, T; Travnicek, P, 2021: On the Origin of Tetraploid Vernal Grasses (Anthoxanthum) in Europe. GENES 12(7), doi: 10.3390/genes12070966
• Slenker, M; Kantor, A; Marhold, K; Schmickl, R; Mandakova, T; Lysak, MA; Perny, M; Cabonova, M; Slovak, M; Zozomova-Lihova, J, 2021: Allele Sorting as a Novel Approach to Resolving the Origin of Allotetraploids Using Hyb-Seq Data: A Case Study of the Balkan Mountain Endemic Cardamine barbaraeoides. FRONTIERS IN PLANT SCIENCE 12, doi: 10.3389/fpls.2021.659275
• Dogan, M; Pouch, M; Mandakova, T; Hlouskova, P; Guo, XY; Winter, P; Chumova, Z; Van Niekerk, A; Mummenhoff, K; Al-Shehbaz, IA; Mucina, L; Lysak, MA, 2021: Evolution of Tandem Repeats Is Mirroring Post-polyploid Cladogenesis in Heliophila (Brassicaceae). FRONTIERS IN PLANT SCIENCE 11, doi: 10.3389/fpls.2020.607893
• Wos, G; Bohutinska, M; Noskova, J; Mandakova, T; Kolar, F, 2021: Parallelism in gene expression between foothill and alpine ecotypes in Arabidopsis arenosa. PLANT JOURNAL , doi: 10.1111/tpj.15105
• Mandakova, T; Ashby, K; Price, BJ; Windham, MD; Carman, JG; Lysak, MA, 2021: Genome structure and apomixis in Phoenicaulis (Brassicaceae; Boechereae). JOURNAL OF SYSTEMATICS AND EVOLUTION , doi: 10.1111/jse.12555
• Guo, X; Mandáková, T; Trachtová, K; Özüdoğru, B; Liu, J; Lysak, MA , 2021: Linked by ancestral bonds: multiple whole-genome duplications and reticulate evolution in a Brassicaceae tribe. MOLECULAR BIOLOGY AND EVOLUTION 38(5), p. 1695 - 1714, doi: 10.1093/molbev/msaa327

2020

• Mandakova, T; Hlouskova, P; Windham, MD; Mitchell-Olds, T; Ashby, K; Price, B; Carman, J; Lysak, MA, 2020: Chromosomal Evolution and Apomixis in the Cruciferous Tribe Boechereae. FRONTIERS IN PLANT SCIENCE 11, doi: 10.3389/fpls.2020.00514
• Walden, N; Nguyen, TP; Mandakova, T; Lysak, MA; Schranz, ME, 2020: Genomic Blocks inAethionema arabicumSupport Arabideae as Next Diverging Clade in Brassicaceae. FRONTIERS IN PLANT SCIENCE 11, doi: 10.3389/fpls.2020.00719
• Penner, S; Dror, B; Aviezer, I; Bar-Lev, Y; Salman-Minkov, A; Mandakova, T; Smarda, P; Mayrose, I; Sapir, Y, 2020: Phenology and polyploidy in annual Brachypodium species (Poaceae) along the aridity gradient in Israel. JOURNAL OF SYSTEMATICS AND EVOLUTION 58(2), p. 189 - 199, doi: 10.1111/jse.12489
• Mandakova, T; Hlouskova, P; Koch, MA; Lysak, MA, 2020: Genome Evolution in Arabideae Was Marked by Frequent Centromere Repositioning. PLANT CELL 32(3), p. 650 - 665, doi: 10.1105/tpc.19.00557
• Melicharkova, A; Slenker, M; Zozomova-Lihova, J; Skokanova, K; Singliarova, B; Kacmarova, T; Cabonova, M; Kempa, M; Sramkova, G; Mandakova, T; Lysak, MA; Svitok, M; Martonfiova, L; Marhold, K, 2020: So Closely Related and Yet So Different: Strong Contrasts Between the Evolutionary Histories of Species of the Cardamine pratensis Polyploid Complex in Central Europe. FRONTIERS IN PLANT SCIENCE 11, doi: 10.3389/fpls.2020.588856

2019

• Hlouskova, P; Mandakova, T; Pouch, M; Travnicek, P; Lysak, MA, 2019: The large genome size variation in the Hesperis clade was shaped by the prevalent proliferation of DNA repeats and rarer genome downsizing. ANNALS OF BOTANY 124(1), p. 103 - 119, doi: 10.1093/aob/mcz036
• Mandakova, T; Pouch, M; Brock, JR; Al-Shehbaz, IA; Lysak, MA, 2019: Origin and Evolution of Diploid and Allopolyploid Camelina Genomes Were Accompanied by Chromosome Shattering. PLANT CELL 31(11), p. 2596 - 2612, doi: 10.1105/tpc.19.00366
• Mandakova, T; Zozomova-Lihova, J; Kudoh, H; Zhao, YP; Lysak, MA; Marhold, K, 2019: The story of promiscuous crucifers: origin and genome evolution of an invasive species, Cardamine occulta (Brassicaceae), and its relatives. ANNALS OF BOTANY 124(2), p. 209 - 220, doi: 10.1093/aob/mcz019
• Finke, A; Mandakova, T; Nawaz, K; Vu, GTH; Novak, P; Macas, J; Lysak, MA; Pecinka, A, 2019: Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda. PLANT JOURNAL , doi: 10.1111/tpj.14380
• Peska, V; Mandakova, T; Ihradska, V; Fajkus, J, 2019: Comparative Dissection of Three Giant Genomes: Allium cepa, Allium sativum, and Allium ursinum. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 20(3), doi: 10.3390/ijms20030733
• Ponert, J; Chumova, Z; Mandakova, T; Travnicek, P, 2019: A new species of Acianthera (Pleurothallidinae, Orchidaceae) from Brazil. PHYTOTAXA 402(1), p. 29 - 37, doi: 10.11646/phytotaxa.402.1.4
• Brock, JR; Mandakova, T; Lysak, MA; Al-Shehbaz, IA, 2019: Camelina neglecta (Brassicaceae, Camelineae), a new diploid species from Europe. PHYTOKEYS (115), p. 51 - 57, doi: 10.3897/phytokeys.115.31704

2018

• Pysek, P; Skalova, H; Cuda, J; Guo, WY; Suda, J; Dolezal, J; Kauzal, O; Lambertini, C; Lucanova, M; Mandakova, T; Moravcova, L; Pyskova, K; Brix, H; Meyerson, LA, 2018: Small genome separates native and invasive populations in an ecologically important cosmopolitan grass. ECOLOGY 99(1), p. 79 - 90, doi: 10.1002/ecy.2068
• Mandáková, T.; Lysak, M., 2018: Post-polyploid diploidization and diversification through dysploid changes. CURRENT OPINION IN PLANT BIOLOGY , doi: 10.1016/j.pbi.2018.03.001
• Mandakova, T; Guo, XY; Ozudogru, B; Mummenhoff, K; Lysak, MA, 2018: Hybridization-facilitated genome merger and repeated chromosome fusion after 8 million years. PLANT JOURNAL 96(4), p. 748 - 760, doi: 10.1111/tpj.14065
• Slenker, M; Zozomova-Lihova, J; Mandakova, T; Kudoh, H; Zhao, YP; Soejima, A; Yahara, T; Skokanova, K; Spaniel, S; Marhold, K, 2018: Morphology and genome size of the widespread weed Cardamine occulta: how it differs from cleistogamic C. kokaiensis and other closely related taxa in Europe and Asia. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY 187(3), p. 456 - 482, doi: 10.1093/botlinnean/boy030
• Mandáková, T; Lysak, MA , 2018: Healthy roots and leaves: comparative genome structure of horseradish and watercress. PLANT PHYSIOLOGY , doi: 10.1104/pp.18.01165
• Filiault, DL; Ballerini, ES; Mandáková, T; Aköz, G; Derieg, NJ; Schmutz, J; Jenkins, J; Grimwood, J; Shu, S; Hayes, RD; Hellsten, U; Barry, K; Yan, J; Mihaltcheva, S; Karafiátová, M; Nizhynska, V; Kramer, EM; Lysak, MA; Hodges, SA; Nordborg, M, 2018: The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history. ELIFE
• Kobrlova, L; Mandakova, T; Hrones, M, 2018: Taxonomic status and typification of a neglected name Symphytum leonhardtianum from the Symphytum tuberosum complex (Boraginaceae). PHYTOTAXA 349(3), p. 225 - 236, doi: 10.11646/phytotaxa.349.3.3
• Esmailbegi, S; Al-Shehbaz, IA; Pouch, M; Mandakova, T; Mummenhoff, K; Rahiminejad, MR; Mirtadzadini, M; Lysak, MA, 2018: Phylogeny and systematics of the tribe Thlaspideae (Brassicaceae) and the recognition of two new genera. TAXON 67(2), p. 324 - 340, doi: 10.12705/672.4

2017

• Mandakova, T; Thorbjornsson, H; Pisupati, R; Reichardt, I; Lysak, MA; Anamthawat-Jonsson, K, 2017: Icelandic accession of Arabidopsis thaliana confirmed with cytogenetic markers and its origin inferred from whole-genome sequencing. ICELANDIC AGRICULTURAL SCIENCES 30, p. 29 - 38, doi: 10.16886/IAS.2017.03
• Mandakova, T; Li, Z; Barker, MS; Lysak, MA, 2017: Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention. PLANT JOURNAL 91(1), p. 3 - 21, doi: 10.1111/tpj.13553
• Mandakova, T; Pouch, M; Harmanova, K; Zhan, SH; Mayrose, I; Lysak, MA, 2017: Multispeed genome diploidization and diversification after an ancient allopolyploidization. MOLECULAR ECOLOGY 26(22), p. 6445 - 6462, doi: 10.1111/mec.14379
• Mandakova, T; Hlouskova, P; German, DA; Lysaka, MA, 2017: Monophyletic Origin and Evolution of the Largest Crucifer Genomes. PLANT PHYSIOLOGY 174(4), p. 2062 - 2071, doi: 10.1104/pp.17.00457
• Chumova, Z; Zaveska, E; Mandakova, T; Krak, K; Travnicek, P, 2017: The Mediterranean: the cradle of Anthoxanthum (Poaceae) diploid diversity. ANNALS OF BOTANY 120(2), p. 285 - 302, doi: 10.1093/aob/mcx021
• Lee, CR; Wang, B; Mojica, JP; Mandáková, T; Prasad, KV; Goicoechea, JL; Perera, N; Hellsten, U; Hundley, HN; Johnson, J; Grimwood, J; Barry, K; Fairclough, S; Jenkins, JW; Yu, Y; Kudrna, D; Zhang, J; Talag, J; Golser, W; Ghattas, K; Schranz, ME; Wing, R; Lysak, MA; Schmutz, J; Rokhsa,r DS; Mitchell-Olds, T, 2017: Young inversion with multiple linked QTLs under selection in a hybrid zone. NATURE ECOLOGY & EVOLUTION , doi: 10.1038/s41559-017-0119
• Rabanal, FA; Nizhynska, V; Mandakova, T; Novikova, PY; Lysak, MA; Mott, R; Nordborg, M, 2017: Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana. G3-GENES GENOMES GENETICS 7(4), p. 1201 - 1209, doi: 10.1534/g3.117.040204
• Rabanal, FA; Mandakova, T; Soto-Jimenez, LM; Greenhalgh, R; Parrott, DL; Lutzmayer, S; Steffen, JG; Nizhynska, V; Mott, R; Lysak, MA; Clark, RM; Nordborg, M, 2017: Epistatic and allelic interactions control expression of ribosomal RNA gene clusters in Arabidopsis thaliana. GENOME BIOLOGY 18, doi: 10.1186/s13059-017-1209-z

2016

• Mandakova T; Lysak MA, 2016: Painting of Arabidopsis chromosomes with chromosome-specific BAC Clones. CURRENT PROTOCOLS IN PLANT BIOLOGY , p. 359 - 371, doi: 10.1002/cppb.20022
• Mandakova, T; Gloss, AD; Whiteman, NK; Lysak, MA, 2016: How diploidization turned a tetraploid into a pseudotriploid. AMERICAN JOURNAL OF BOTANY 103(7), p. 1187 - 1196, doi: 10.3732/ajb.1500452
• Mandakova T; Lysak MA, 2016: Chromosome preparation for cytogenetic analyses in Arabidopsis. CURRENT PROTOCOLS IN PLANT BIOLOGY (1), p. 43 - 51, doi: 10.1002/cppb.20009
• Lysak, MA; Mandakova, T; Schranz, ME, 2016: Comparative paleogenomics of crucifers: ancestral genomic blocks revisited. CURRENT OPINION IN PLANT BIOLOGY 30, p. 108 - 115, doi: 10.1016/j.pbi.2016.02.001
• Geiser, C; Mandakova, T; Arrigo, N; Lysak, MA; Parisod, C, 2016: Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard. PLANT CELL 28(1), p. 17 - 27, doi: 10.1105/tpc.15.00791
• Mandakova, T; Pouch, M; Harmanova, K; Lysak, MA, 2016: Polyploidy-Driven Diversification and Diploidization: The Origin of the Australian and New Zealand Crucifers. CYTOGENETIC AND GENOME RESEARCH 148(2016-03-02T00:00:00.000), p. 113 - 113
• Pospisiloaa, M; Mandakova, T; Fer, T; Zaveska, E; Sida, O; Leong-Skornickova, J; Pouch, M; Lysak, MA; Suksathan, P; Saengwirotphan, S; Newman, M, 2016: Phylogeny, Genome Size Evolution and Surprisingly Diverse Chromosome Numbers in the (Sub) Tropical Genus Globba (Zingiberaceae). CYTOGENETIC AND GENOME RESEARCH 148(2016-03-02T00:00:00.000), p. 116 - 117
• Mandakova, T; Kovarik, A; Marhold, K; Lysak, MA, 2016: Multiple Patterns of Genome Evolution in the Brassicaceae: A Lesson from the Polyploid-Rich Genus Cardamine. CYTOGENETIC AND GENOME RESEARCH 148(2016-03-02T00:00:00.000), p. 112 - 113
• Mandakova, T; Lysak, MA, 2016: Karyotype and Genome Evolution of Crucifers (Brassicaceae). CYTOGENETIC AND GENOME RESEARCH 148(2016-03-02T00:00:00.000), p. 112 - 112
• Chumova, Z; Mandakova, T; Travnicek, P, 2016: Are B-chromosomes responsible for the extraordinary genome size variation in selected Anthoxanthum annuals?. PLANT SYSTEMATICS AND EVOLUTION 302(6), p. 731 - 738, doi: 10.1007/s00606-016-1295-5

2015

• Tan, EH; Henry, IM; Ravi, M; Bradnam, KR; Mandakova, T; Marimuthu, MP; Korf, I; Lysak, MA; Comai, L; Chan, SW, 2015: Catastrophic chromosomal restructuring during genome elimination in plants. ELIFE 4, p. e06516 - , doi: 10.7554/eLife.06516
• Cheng, F; Lysak, MA; Mandáková, T; Wang, X, 2015: The common ancestral genome of the Brassica species. IN: WANG X, KOLE CH (EDS.) THE BRASSICA RAPA GENOME. SPRINGER. , p. 97 - 106
• Mandakova, T; Schranz, ME; Sharbel, TF; de Jong, H; Lysak, MA, 2015: Karyotype evolution in apomictic Boechera and the origin of the aberrant chromosomes. PLANT JOURNAL 82(5), p. 785 - 793, doi: 10.1111/tpj.12849
• Willing, E-M; Rawat, V; Mandáková, T; Maumus, F; Velikkakam James, G; Nordström, KJV; Becker, C; Warthmann, N; Chica, C; Szarzynska, B; Zytnicki, M; Albani, MC; Kiefer, C; Bergonzi, S; Castaings, L; Mateos, JL; Berns, MC; Bujdoso, N; Piofczyk, T; de Lorenzo, L; Barrero-Sicilia, C; Mateos, I; Piednoël, M; Hagmann, J; Chen-Min-Tao, R; Iglesias-Fernández, R; Schuster, SC; Alonso-Blanco, C; Roudier, F; Carbonero, P; Paz-Ares, J; Davis, SJ; Pecinka, A; Quesneville, H; Colot, V; Lysak, MA; Weigel, D; Coupland, G; Schneeberger, K, 2015: Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. NATURE PLANTS 1(2), p. 1 - 7, doi: 10.1038/nplants.2014.23
• Kolář, F; Lučanová, M; Záveská, E; Fuxová, G; Mandáková, T; Španiel, S; Senko, D; Svitok, M; Kolník, M; Gudžinskas, Z; Marhold, K, 2015: Ecological segregation does not drive the intricate parapatric distribution of diploid and tetraploid cytotypes of the Arabidopsis arenosa group (Brassicaceae). BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY , doi: 10.1111/bij.12479
• Mandakova, T; Singh, V; Kramer, U; Lysak, MA, 2015: Genome Structure of the Heavy Metal Hyperaccumulator Noccaea caerulescens and Its Stability on Metalliferous and Nonmetalliferous Soils. PLANT PHYSIOLOGY 169(1), p. 674 - 689, doi: 10.1104/pp.15.00619
• Chumova, Z; Krejcikova, J; Mandakova, T; Suda, J; Travnicek, P, 2015: Evolutionary and Taxonomic Implications of Variation in Nuclear Genome Size: Lesson from the Grass Genus Anthoxanthum (Poaceae). PLOS ONE 10(7), p. e0133748 - , doi: 10.1371/journal.pone.0133748
• Pouch, M; Mandakova, T; Hlouskova, P; Harmanova, K; Visnovska, M; Hobza, R; Safar, J; Lysak, MA, 2015: The fate of centromeres in a mesopolyploid genome of Stenopetalum nutans (Brassicaceae). CHROMOSOME RESEARCH 23(2), p. 398 - 399

2014

• Majerova, E; Mandakova, T; Vu, GTH; Fajkus, J; Lysak, MA; Fojtova, M, 2014: Chromatin features of plant telomeric sequences at terminal vs. internal positions. FRONTIERS IN PLANT SCIENCE 5, p. 593 - , doi: 10.3389/fpls.2014.00593
• Kiefer, M; Schmickl, R; German, DA; Mandakova, T; Lysak, MA; Al-Shehbaz, IA; Franzke, A; Mummenhoff, K; Stamatakis, A; Koch, MA, 2014: BrassiBase: Introduction to a Novel Knowledge Database on Brassicaceae Evolution. PLANT AND CELL PHYSIOLOGY 55(1), p. e3 - , doi: 10.1093/pcp/pct158
• Mandakova, T; Marhold, K; Lysak, MA, 2014: The widespread crucifer species Cardamine flexuosa is an allotetraploid with a conserved subgenomic structure. NEW PHYTOLOGIST 201(3), p. 982 - 992, doi: 10.1111/nph.12567
• Hay, AS; Pieper, B; Cooke, E; Mandakova, T; Cartolano, M; Tattersall, AD; Ioio, RD; McGowan, SJ; Barkoulas, M; Galinha, C; Rast, MI; Hofhuis, H; Then, C; Plieske, J; Ganal, M; Mott, R; Martinez-Garcia, JF; Carine, MA; Scotland, RW; Gan, XC; Filatov, DA; L, 2014: Cardamine hirsuta: a versatile genetic system for comparative studies. PLANT JOURNAL 78(1), p. 1 - 15, doi: 10.1111/tpj.12447
• Zozomova-Lihova, J; Mandakova, T; Kovarikova, A; Muhlhausen, A; Mummenhoff, K; Lysak, MA; Kovarik, A, 2014: When fathers are instant losers: homogenization of rDNA loci in recently formed Cardamine X schulzii trigenomic allopolyploid. NEW PHYTOLOGIST 203(4), p. 1096 - 1108, doi: 10.1111/nph.12873

2013

• Haudry, A; Platts, AE; Vello, E; Hoen, DR; Leclercq, M; Williamson, RJ; Forczek, E; Joly-Lopez, Z; Steffen, JG; Hazzouri, KM; Dewar, K; Stinchcombe, JR; Schoen, DJ; Wang, XW; Schmutz, J; Town, CD; Edger, PP; Pires, JC; Schumaker, KS; Jarvis, DE; Mandakova, 2013: An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. NATURE GENETICS 45(8), p. 891 - U228, doi: 10.1038/ng.2684
• Slotte, T; Hazzouri, KM; Agren, JA; Koenig, D; Maumus, F; Guo, YL; Steige, K; Platts, AE; Escobar, JS; Newman, LK; Wang, W; Mandakova, T; Vello, E; Smith, LM; Henz, SR; Steffen, J; Takuno, S; Brandvain, Y; Coop, G; Andolfatto, P; Hu, TT; Blanchette, M; Cl, 2013: The Capsella rubella genome and the genomic consequences of rapid mating system evolution. NATURE GENETICS 45(7), p. 831 - U165, doi: 10.1038/ng.2669
• Long, Q; Rabanal, FA; Meng, DZ; Huber, CD; Farlow, A; Platzer, A; Zhang, QR; Vilhjalmsson, BJ; Korte, A; Nizhynska, V; Voronin, V; Korte, P; Sedman, L; Mandakova, T; Lysak, MA; Seren, U; Hellmann, I; Nordborg, M, 2013: Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. NATURE GENETICS 45(8), p. 884 - U218, doi: 10.1038/ng.2678
• Mandakova, T; Kovarik, A; Zozomova-Lihova, J; Shimizu-Inatsugi, R; Shimizu, KK; Mummenhoff, K; Marhold, K; Lysak, MA, 2013: The More the Merrier: Recent Hybridization and Polyploidy in Cardamine. PLANT CELL 25(9), p. 3280 - 3295, doi: 10.1105/tpc.113.114405
• Cheng, F; Mandakova, T; Wu, J; Xie, Q; Lysak, MA; Wang, XW, 2013: Deciphering the Diploid Ancestral Genome of the Mesohexaploid Brassica rapa. PLANT CELL 25(5), p. 1541 - 1554, doi: 10.1105/tpc.113.110486

2012

• Mandakova, T; Mummenhoff, K; Al-Shehbaz, IA; Mucina, L; Muhlhausee, A; Lysak, MA, 2012: Whole-genome triplication and species radiation in the southern African tribe Heliophileae (Brassicaceae). TAXON 61(5), p. 989 - 1000

2011

• Majerova, E; Fojtova, M; Mandakova, T; Fajkus, J, 2011: Methylation of plant telomeric DNA: what do the results say?. PLANT MOLECULAR BIOLOGY 77(6), p. 533 - 536, doi: 10.1007/s11103-011-9834-5
• Ambrozova, K; Mandakova, T; Bures, P; Neumann, P; Leitch, IJ; Koblizkova, A; Macas, J; Lysak, MA, 2011: Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies. ANNALS OF BOTANY 107(2), p. 255 - 268, doi: 10.1093/aob/mcq235

2010

• Lysak, MA; Mandakova, T; Lacombe, E, 2010: Reciprocal and Multi-Species Chromosome BAC Painting in Crucifers (Brassicaceae). CYTOGENETIC AND GENOME RESEARCH 129(1 III), p. 184 - 189, doi: 10.1159/000312951
• Mandakova, T; Heenan, PB; Lysak, MA, 2010: Island species radiation and karyotypic stasis in Pachycladon allopolyploids. BMC EVOLUTIONARY BIOLOGY 10, doi: 10.1186/1471-2148-10-367
• Mandakova, T; Joly, S; Krzywinski, M; Mummenhoff, K; Lysak, MA, 2010: Fast Diploidization in Close Mesopolyploid Relatives of Arabidopsis. PLANT CELL 22(7), p. 2277 - 2290, doi: 10.1105/tpc.110.074526

2009

• Dierschke, T; Mandakova, T; Lysak, MA; Mummenhoff, K, 2009: A bicontinental origin of polyploid Australian/New Zealand Lepidium species (Brassicaceae)? Evidence from genomic in situ hybridization. ANNALS OF BOTANY 104(4), p. 681 - 688
• Lysak, Martin A.; Mandakova, Terezie; Schranz, M. Eric, 2009: Polyploidy events and karyotype alterations in the genome evolution of crucifers (Brassicaceae). CHROMOSOME RESEARCH 17(4), p. 553 - 553

• The origin and evolution of apomixis-related chromosomes in Boechera (Brassicaceae), Grantová agentura ČR, 2021 - 2023
• The polyploid past versus diploid present: evolution and diversification of the southern African Heliophila, Grantová agentura ČR, 2019 - 2021
• Ribosomal RNA genes - travellers in time and the genomes, Grantová agentura ČR, 2019 - 2021
• The role of hybridization and apomixis in evolution of the tribe Boechereae (LTAUSA17002), Ministerstvo školství, mládeže a tělovýchovy ČR, 2017 - 2020
• Chybějící souvislosti: evoluce genomu v tribu Camelineae (brukvovité) (GA17-13029S), Grantová agentura ČR, 2017 - 2019
• Evolution and function of complex plant genomes (P501/12/G090), Czech Science Foundation - Projects for promotion of excellence in basic research, 2012 - 2018
• Evoluce genomu a časoprostorová diversita v tribu Arabideae (GA15-18545S), Grantová agentura ČR, 2015 - 2017
• Establishing Czech-Icelandic collaboration in plant cytogenomics (EHP-CZ07-MOP-1-1052014), Ministry of Finance - EEA / Norway Grants, 2015 - 2016
• Evoluce, diversifikace a biogeografie polyploidní čeledi Zingiberaceae: synergie fylogenomiky, cytogenomiky, geologické a klimatické historie (GA14-13541S), Grantová agentura ČR, 2014 - 2016
• Role mesopolyploidie v evoluci celedi Brassicaceae (GA13-10159S), Grantová agentura ČR, 2013 - 2015
• Trendy v evoluci polyploidních komplexů: obdobné nebo odlišné příběhy u třech skupin z čeledi Brassicaceae (GAP506/12/0668), Grantová agentura ČR, 2012 - 2015
• Zaměstnáním nejlepších mladých vědců k rozvoji mezinárodní spolupráce (CZ.1.07/2.3.00/30.0037), Ministerstvo školství, mládeže a tělovýchovy ČR, 2013 - 2015
• EVOGEN - Rozvoj výzkumné excelence v oblasti evoluční cytogenomiky, epigenetiky a buněčné signalizace (CZ.1.07/2.3.00/20.0189), Ministerstvo školství, mládeže a tělovýchovy ČR, 2012 - 2015
• Evoluce genomu alopolyploidních řeřišnic (Cardamine) rozdílného fylogenetického stáří (GAP501/10/1014), Grantová agentura ČR, 2010 - 2012